Curated BLAST
Searching in Rhizobium freirei PRF 81 (GCF_000359745.1)
Found 11 curated entries in PaperBLAST's database that match '4.2.1.41' as complete word(s).
These curated entries have 9 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Rhizobium freirei PRF 81, or try another query
kdgD RHSP_RS23350 RHSP_82611 WP_004124110.1: 5-dehydro-4-deoxyglucarate dehydratase
is similar to: | PaperBLAST |
Q8UB77: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Agrobacterium fabrum | 63% id,
98% cov |
PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas simiae | 56% id,
99% cov |
A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans | 56% id,
99% cov |
PP_3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas putida | 56% id,
99% cov |
Pf1N1B4_1110: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas fluorescens | 56% id,
99% cov |
B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni | 53% id,
99% cov |
KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi | 52% id,
99% cov |
BPHYT_RS24155: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans | 53% id,
99% cov |
HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae | 52% id,
98% cov |
More... |
dapA RHSP_RS20120 RHSP_34886 WP_004121824.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to: | PaperBLAST |
A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans | 30% id,
96% cov |
KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi | 32% id,
91% cov |
B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni | 31% id,
92% cov |
BPHYT_RS24155: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans | 30% id,
95% cov |
PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas simiae | 30% id,
93% cov |
HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae | 28% id,
95% cov |
Pf1N1B4_1110: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas fluorescens | 29% id,
90% cov |
PP_3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas putida | 29% id,
90% cov |
More... |
RHSP_RS18255 RHSP_79249 WP_037152811.1: dihydrodipicolinate synthase family protein
is similar to: | PaperBLAST |
Q8UB77: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Agrobacterium fabrum | 30% id,
95% cov |
PP_3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas putida | 28% id,
98% cov |
Pf1N1B4_1110: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas fluorescens | 27% id,
98% cov |
PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas simiae | 28% id,
93% cov |
KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi | 28% id,
91% cov |
A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans | 27% id,
95% cov |
BPHYT_RS24155: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans | 26% id,
92% cov |
HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae | 27% id,
88% cov |
B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni | 26% id,
89% cov |
More... |
RHSP_RS25465 RHSP_53889 WP_004125274.1: dihydrodipicolinate synthase family protein
is similar to: | PaperBLAST |
BPHYT_RS24155: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans | 27% id,
97% cov |
KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi | 27% id,
97% cov |
HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae | 27% id,
97% cov |
PP_3599: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas putida | 26% id,
99% cov |
A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans | 27% id,
95% cov |
PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas simiae | 26% id,
99% cov |
B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni | 26% id,
99% cov |
Pf1N1B4_1110: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas fluorescens | 25% id,
99% cov |
More... |
RHSP_RS00830 WP_037148768.1: dihydrodipicolinate synthase family protein
is similar to: | PaperBLAST |
B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni | 25% id,
95% cov |
BPHYT_RS24155: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans | 24% id,
95% cov |
KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi | 24% id,
95% cov |
A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans | 24% id,
95% cov |
HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae | 22% id,
94% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory