Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylosarcina fibrata AML-C10 (GCF_000372865.1)

Found 6 curated entries in PaperBLAST's database that match '1.1.3.21' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylosarcina fibrata AML-C10, or try another query

A3OW_RS0122820 WP_020565782.1: glycerol-3-phosphate dehydrogenase/oxidase
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

33% id,
60% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

30% id,
66% cov

lhgO A3OW_RS0100810 WP_020561541.1: L-2-hydroxyglutarate oxidase
is similar to:
PaperBLAST

glpO: glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides
Q70GP9: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides

27% id,
70% cov

thiO A3OW_RS0111925 WP_020563670.1: glycine oxidase ThiO
is similar to:
PaperBLAST

GLPO_MYCPN / P75063: Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae

39% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory