Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylosarcina fibrata AML-C10 (GCF_000372865.1)

Found 85 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylosarcina fibrata AML-C10, or try another query

A3OW_RS0123290 WP_020565870.1: thiolase family protein
is similar to:
PaperBLAST

Sama_0031: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella amazonensis

47% id,
100% cov

HP15_1513: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Marinobacter adhaerens

47% id,
99% cov

Shewana3_0023: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella sp.

47% id,
100% cov

More...

fabF A3OW_RS0109880 WP_026223470.1: beta-ketoacyl-ACP synthase II
is similar to:
PaperBLAST

phaA / Q3IZW1: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Cereibacter sphaeroides

25% id,
59% cov

thl / P45359: acetoacetyl-CoA thiolase monomer (EC 2.3.1.16) from Clostridium acetobutylicum

33% id,
24% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

30% id,
23% cov

More...

A3OW_RS0109860 WP_020563275.1: beta-ketoacyl-ACP synthase III
is similar to:
PaperBLAST

G3CH53: acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Ovis aries

32% id,
33% cov

A3OW_RS0123285 WP_020565869.1: 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

29% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory