Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Methylosarcina fibrata AML-C10 (GCF_000372865.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylosarcina fibrata AML-C10, or try another query

lysA A3OW_RS0117165 WP_020564681.1: diaminopimelate decarboxylase is similar to:	PaperBLAST
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	62% id, 100% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	45% id, 99% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	43% id, 98% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	42% id, 98% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	41% id, 93% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	38% id, 97% cov
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima	38% id, 95% cov
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli	35% id, 98% cov
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis	35% id, 94% cov
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus	33% id, 97% cov
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis	33% id, 97% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	36% id, 82% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	36% id, 83% cov
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum	31% id, 93% cov
DCDA_MYCTU / P9WIU7: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis P9WIU7: diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis	31% id, 93% cov
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	34% id, 42% cov
More...

A3OW_RS0104545 WP_020562242.1: type III PLP-dependent enzyme is similar to:	PaperBLAST
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus	30% id, 88% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	29% id, 89% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	29% id, 89% cov
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	26% id, 92% cov
More...

speA A3OW_RS0103080 WP_020561961.1: biosynthetic arginine decarboxylase is similar to:	PaperBLAST
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	26% id, 76% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	25% id, 75% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	25% id, 73% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	26% id, 68% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	25% id, 68% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	23% id, 52% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	23% id, 52% cov
More...

A3OW_RS0110035 WP_020563310.1: aspartate kinase is similar to:	PaperBLAST
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	29% id, 47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory