Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylosarcina fibrata AML-C10 (GCF_000372865.1)

Found 6 curated entries in PaperBLAST's database that match '6.1.1.24' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylosarcina fibrata AML-C10, or try another query

A3OW_RS0100545 WP_020561491.1: glutamine--tRNA ligase/YqeY domain fusion protein
is similar to:
PaperBLAST

P00962: glutamine-tRNA ligase (EC 6.1.1.18); glutamate-tRNAGln ligase (EC 6.1.1.24) from Escherichia coli

63% id,
99% cov

gltX / P22250: glutamyl-tRNAGlx synthetase (EC 6.1.1.17; EC 6.1.1.24) from Bacillus subtilis

23% id,
62% cov

CCNA_01982: glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) from Caulobacter crescentus

26% id,
42% cov

More...

gltX A3OW_RS0104295 WP_026223325.1: glutamate--tRNA ligase
is similar to:
PaperBLAST

CCNA_01982: glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) from Caulobacter crescentus

41% id,
98% cov

Q9X2I8: glutamate-tRNAGln ligase (EC 6.1.1.24) from Thermotoga maritima

38% id,
95% cov

gltX / P22250: glutamyl-tRNAGlx synthetase (EC 6.1.1.17; EC 6.1.1.24) from Bacillus subtilis

36% id,
99% cov

More...

gluQRS A3OW_RS0120100 WP_020565256.1: tRNA glutamyl-Q(34) synthetase GluQRS
is similar to:
PaperBLAST

gltX / P22250: glutamyl-tRNAGlx synthetase (EC 6.1.1.17; EC 6.1.1.24) from Bacillus subtilis

33% id,
59% cov

CCNA_01982: glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) from Caulobacter crescentus

32% id,
60% cov

Q9X2I8: glutamate-tRNAGln ligase (EC 6.1.1.24) from Thermotoga maritima

35% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory