Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio oxyclinae DSM 11498 (GCF_000375485.1)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Desulfovibrio oxyclinae DSM 11498, or try another query

cysK B149_RS0111390 WP_018125286.1: cysteine synthase A
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

40% id,
99% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

37% id,
100% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

42% id,
66% cov

More...

B149_RS0103730 WP_018123824.1: cysteine synthase
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

38% id,
97% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

35% id,
96% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

42% id,
64% cov

More...

guaB B149_RS0104735 WP_018124021.1: IMP dehydrogenase
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

32% id,
58% cov

B149_RS17030 WP_018125162.1: CBS domain-containing protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

29% id,
63% cov

B149_RS0110935 WP_018125200.1: CBS domain-containing protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

29% id,
63% cov

B149_RS0113310 WP_018125663.1: CBS domain-containing protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

40% id,
26% cov

B149_RS0110010 WP_018125056.1: glycine betaine/L-proline ABC transporter ATP-binding protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

34% id,
27% cov

B149_RS0112590 WP_018125524.1: CBS domain-containing protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

32% id,
25% cov

B149_RS0102540 WP_018123591.1: CBS domain-containing protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

28% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory