Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio oxyclinae DSM 11498 (GCF_000375485.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio oxyclinae DSM 11498, or try another query

tpiA B149_RS0110990 WP_018125209.1: triose-phosphate isomerase
is similar to:		 PaperBLAST

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus

 42% id,
98% cov

TPIS_YEAST / P00942: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Saccharomyces cerevisiae
P00942: triose-phosphate isomerase (EC 5.3.1.1) from Saccharomyces cerevisiae

 44% id,
94% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

 43% id,
95% cov

More...

B149_RS0110995 WP_018125210.1: phosphoglycerate kinase
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 51% id,
60% cov

B149_RS0112495 WP_026167600.1: nitronate monooxygenase family protein
is similar to:		 PaperBLAST

Q97VM8: triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus

 25% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory