Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio oxyclinae DSM 11498 (GCF_000375485.1)

Found 11 curated entries in PaperBLAST's database that match '6.2.1.16' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfovibrio oxyclinae DSM 11498, or try another query

B149_RS0106205 WP_018124314.1: AMP-binding protein
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

47% id,
94% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

21% id,
81% cov

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

21% id,
81% cov

More...

acs B149_RS0113155 WP_018125632.1: acetate--CoA ligase
is similar to:
PaperBLAST

aacS / D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans
D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

30% id,
95% cov

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

29% id,
90% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

29% id,
90% cov

More...

acs B149_RS0106290 WP_018124331.1: acetate--CoA ligase
is similar to:
PaperBLAST

aacS / D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans
D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

28% id,
92% cov

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

28% id,
88% cov

AACS_HUMAN / Q86V21: Acetoacetyl-CoA synthetase; Acyl-CoA synthetase family member 1; Protein sur-5 homolog; EC 6.2.1.16 from Homo sapiens

25% id,
90% cov

More...

B149_RS0106195 WP_018124312.1: AMP-binding protein
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
78% cov

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

29% id,
56% cov

SUR5_CAEEL / Q21166: Acetoacetyl-CoA synthetase; Suppressor of activated let-60 Ras protein 5; EC 6.2.1.16 from Caenorhabditis elegans

23% id,
51% cov

B149_RS0108700 WP_018124797.1: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
62% cov

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

21% id,
82% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

20% id,
82% cov

More...

B149_RS0100210 WP_018123142.1: AMP-binding protein
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

25% id,
51% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

34% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory