Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio oxyclinae DSM 11498 (GCF_000375485.1)

Found 39 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio oxyclinae DSM 11498, or try another query

asnB B149_RS0109935 WP_026167556.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

35% id,
97% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

34% id,
64% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

33% id,
64% cov

More...

asnB B149_RS0105935 WP_018124260.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

32% id,
99% cov

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

35% id,
60% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

35% id,
59% cov

More...

asnB B149_RS0106715 WP_026167487.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

ASNS_HUMAN / P08243: Asparagine synthetase [glutamine-hydrolyzing]; Cell cycle control protein TS11; Glutamine-dependent asparagine synthetase; EC 6.3.5.4 from Homo sapiens
P08243: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Homo sapiens

26% id,
94% cov

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

35% id,
64% cov

Asns / P49088: asparagine synthetase subunit (EC 6.3.5.4) from Rattus norvegicus

28% id,
80% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory