Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio oxyclinae DSM 11498 (GCF_000375485.1)

Found 3 curated entries in PaperBLAST's database that match 'ATP-dependent reduction of co(II)balamin' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio oxyclinae DSM 11498, or try another query

B149_RS0114240 WP_018125843.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

DVU0908: ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris

46% id,
96% cov

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

29% id,
57% cov

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

26% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory