Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Thioalkalivibrio thiocyanodenitrificans ARhD 1 (GCF_000378965.1)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thioalkalivibrio thiocyanodenitrificans ARhD 1, or try another query

prpC THITHI_RS0104340 WP_018231851.1: 2-methylcitrate synthase is similar to:	PaperBLAST
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	73% id, 100% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	75% id, 96% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	70% id, 100% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	70% id, 100% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	70% id, 100% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	55% id, 98% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	55% id, 98% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	54% id, 98% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	54% id, 98% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	40% id, 100% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	38% id, 100% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	40% id, 95% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	38% id, 98% cov
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	34% id, 97% cov
More...

THITHI_RS0110830 WP_018233113.1: citrate/2-methylcitrate synthase is similar to:	PaperBLAST
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	39% id, 100% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	39% id, 98% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	37% id, 100% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	37% id, 99% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	39% id, 92% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	36% id, 97% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	37% id, 96% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	37% id, 96% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	37% id, 96% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	36% id, 97% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	36% id, 97% cov
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	34% id, 99% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	33% id, 97% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	34% id, 94% cov
More...

THITHI_RS0101360 WP_018231270.1: citrate synthase is similar to:	PaperBLAST
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	33% id, 97% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	32% id, 97% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	32% id, 97% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	31% id, 99% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	31% id, 97% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	31% id, 97% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	30% id, 98% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	30% id, 99% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	31% id, 93% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	30% id, 94% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	31% id, 93% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	30% id, 93% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	31% id, 90% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	29% id, 91% cov
PRPC_YARLI / Q6C793: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Yarrowia lipolytica	27% id, 82% cov
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The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory