Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio thiocyanodenitrificans ARhD 1 (GCF_000378965.1)

Found 23 curated entries in PaperBLAST's database that match '3.6.1.31' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thioalkalivibrio thiocyanodenitrificans ARhD 1, or try another query

THITHI_RS0112135 WP_018233371.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

Psest_3944: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas stutzeri

62% id,
94% cov

HP15_3195: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Marinobacter adhaerens

59% id,
97% cov

AO356_09525: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens
Pf6N2E2_3783: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens

60% id,
95% cov

More...

mazG THITHI_RS0114340 WP_051080003.1: nucleoside triphosphate pyrophosphohydrolase
is similar to:
PaperBLAST

Q72CU7: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris
DVU1186: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris

38% id,
92% cov

hisI THITHI_RS0112130 WP_018233370.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli

48% id,
47% cov

HIS2_ARATH / O82768: Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Protein HISTIDINE BIOSYNTHESIS 2; EC 3.5.4.19; EC 3.6.1.31 from Arabidopsis thaliana
At-IE / O82768: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19; EC 3.6.1.31) from Arabidopsis thaliana

40% id,
36% cov

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

36% id,
15% cov

hisD THITHI_RS0107240 WP_018232413.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

36% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3025360-3026286 (frame +1) on NZ_KB900536.1 Thioalkalivibrio thiocyanodenitrificans ARhD 1 scaffold1, whole genome shotgun sequence
is similar to:
PaperBLAST

Q72CU7: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris
DVU1186: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris
Also see hits to annotated proteins above

37% id,
97% cov

2547316-2547747 (frame +1) on NZ_KB900536.1 Thioalkalivibrio thiocyanodenitrificans ARhD 1 scaffold1, whole genome shotgun sequence
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
Also see hits to annotated proteins above

44% id,
52% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory