Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Thiomicrorhabdus arctica DSM 13458 (GCF_000381085.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thiomicrorhabdus arctica DSM 13458, or try another query

F612_RS0102770 WP_019556226.1: homoserine dehydrogenase is similar to:	PaperBLAST
DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae	52% id, 100% cov
Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis	43% id, 99% cov
Q56R01: homoserine dehydrogenase (EC 1.1.1.3) from Streptomyces clavuligerus	38% id, 99% cov
DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris	40% id, 94% cov
D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	38% id, 99% cov
P46806: homoserine dehydrogenase (EC 1.1.1.3) from Mycobacterium leprae	38% id, 99% cov
DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Bacillus subtilis P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis	38% id, 100% cov
DHOM_LACLC / P52985: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Lactococcus lactis	37% id, 100% cov
DHOM_CORGL / P08499: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Corynebacterium glutamicum P08499: homoserine dehydrogenase (EC 1.1.1.3) from Corynebacterium glutamicum	38% id, 96% cov
A0A0H2WVX4: homoserine dehydrogenase (EC 1.1.1.3) from Staphylococcus aureus	39% id, 86% cov
D8WXQ2: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	36% id, 92% cov
Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus	36% id, 91% cov
F9VNG5: homoserine dehydrogenase (EC 1.1.1.3) from Sulfurisphaera tokodaii	31% id, 98% cov
O58802: homoserine dehydrogenase (EC 1.1.1.3) from Pyrococcus horikoshii	30% id, 97% cov
Q5AIA2: homoserine dehydrogenase (EC 1.1.1.3) from Candida albicans	26% id, 98% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	33% id, 55% cov
DHOM_EMENI / Q5B998: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Emericella nidulans AN2882: homoserine dehydrogenase; EC 1.1.1.3 from Emericella nidulans	30% id, 45% cov
C1G1C3: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides brasiliensis	31% id, 37% cov
C1GTZ6: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides lutzii	30% id, 37% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	24% id, 39% cov
More...

F612_RS0105640 WP_019556780.1: aspartate kinase is similar to:	PaperBLAST
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	43% id, 54% cov
Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis	28% id, 52% cov
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	31% id, 42% cov
BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron	29% id, 43% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	29% id, 42% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	26% id, 44% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	26% id, 43% cov
MetM / b3940: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli metL / P00562: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli	28% id, 41% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	25% id, 43% cov
More...

pyrH F612_RS0102600 WP_019556192.1: UMP kinase is similar to:	PaperBLAST
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	25% id, 22% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	26% id, 20% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	26% id, 20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory