Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrorhabdus arctica DSM 13458 (GCF_000381085.1)

Found 26 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thiomicrorhabdus arctica DSM 13458, or try another query

gcvP F612_RS0105105 WP_019556676.1: aminomethyl-transferring glycine dehydrogenase
is similar to:		 PaperBLAST

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

 63% id,
100% cov

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 63% id,
100% cov

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 63% id,
100% cov

More...

gcvH F612_RS0105110 WP_019556677.1: glycine cleavage system protein GcvH
is similar to:		 PaperBLAST

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 50% id,
69% cov

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

 45% id,
75% cov

gcvH F612_RS0109630 WP_019557559.1: glycine cleavage system protein GcvH
is similar to:		 PaperBLAST

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 48% id,
68% cov

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

 43% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory