Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Thiomicrorhabdus arctica DSM 13458 (GCF_000381085.1)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thiomicrorhabdus arctica DSM 13458, or try another query

argF F612_RS0110435 WP_019557718.1: ornithine carbamoyltransferase is similar to:	PaperBLAST
OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi	63% id, 98% cov
OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa	63% id, 98% cov
HSERO_RS07185: Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae	53% id, 98% cov
Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti	51% id, 100% cov
OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus	49% id, 97% cov
O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi	49% id, 97% cov
argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis	48% id, 94% cov
OTC_MYCS2 / A0QYS8: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycolicibacterium smegmatis	45% id, 99% cov
OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis	44% id, 99% cov
OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum	42% id, 100% cov
Q9PNU6: ornithine carbamoyltransferase (EC 2.1.3.3) from Campylobacter jejuni	43% id, 98% cov
Q5SJ15: ornithine carbamoyltransferase (EC 2.1.3.3) from Thermus thermophilus	41% id, 97% cov
OTC_THET2 / P96134: Ornithine carbamoyltransferase; OTC; OTCase; EC 2.1.3.3 from Thermus thermophilus	41% id, 97% cov
OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli argI / GB\|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli	40% id, 98% cov
OTC_SCHPO / P31317: Ornithine carbamoyltransferase, mitochondrial; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Schizosaccharomyces pombe arg3 / GI\|1204211: ornithine carbamoyltransferase Arg3; EC 2.1.3.3 from Schizosaccharomyces pombe	42% id, 94% cov
OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli	39% id, 96% cov
arcB / E3PX87: ornithine carbamoyltransferase (EC 2.1.3.3) from Acetoanaerobium sticklandii	38% id, 96% cov
argB / GI\|168017: ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Emericella nidulans	40% id, 90% cov
OTC2A_PSESH / P68747: Ornithine carbamoyltransferase 2, anabolic; OTCase 2; Ornithine carbamoyltransferase 2, phaseolotoxin-insensitive; Phaseolotoxin-resistant ornithine carbamoyltransferase; Toxin-resistant enzyme; ROCT; EC 2.1.3.3 from Pseudomonas savastanoi P68747: ornithine carbamoyltransferase (EC 2.1.3.3) from Pseudomonas savastanoi	37% id, 96% cov
OTC_RAT / P00481: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Rattus norvegicus	41% id, 86% cov
OTC_CHICK / Q9YHY9: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Gallus gallus	41% id, 86% cov
Q837U7: ornithine carbamoyltransferase (EC 2.1.3.3); putrescine carbamoyltransferase (EC 2.1.3.6) from Enterococcus faecalis	38% id, 91% cov
OTCC_LENHI / Q8G998: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Lentilactobacillus hilgardii	37% id, 95% cov
OTC_MOUSE / P11725: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Mus musculus	40% id, 86% cov
OTC / O50039: ornithine carbamoyltransferase (EC 2.1.3.3) from Arabidopsis thaliana	43% id, 81% cov
OTC_HUMAN / P00480: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Homo sapiens OTC / P00480: Ornithine carbamoyltransferase, mitochondrial (EC 2.1.3.3) from Homo sapiens P00480: ornithine carbamoyltransferase (EC 2.1.3.3) from Homo sapiens	40% id, 86% cov
OTC_SHEEP / P84010: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Ovis aries	40% id, 86% cov
OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa	34% id, 99% cov
OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi	33% id, 100% cov
OTC_YEAST / P05150: Ornithine carbamoyltransferase; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Saccharomyces cerevisiae ARG3 / P05150: ornithine carbamoyltransferase (EC 2.1.3.3) from Saccharomyces cerevisiae	33% id, 95% cov
OTCC_MALP2 / Q8EVF5: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Malacoplasma penetrans	31% id, 96% cov
arcB / P75473: ornithine carbamoyltransferase, catabolic (EC 2.1.3.3) from Mycoplasma pneumoniae	31% id, 94% cov
More...

F612_RS0109740 WP_019557581.1: aspartate carbamoyltransferase catalytic subunit is similar to:	PaperBLAST
OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi	28% id, 100% cov
argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis	27% id, 99% cov
OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus	28% id, 96% cov
OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum	26% id, 100% cov
Q5SJ15: ornithine carbamoyltransferase (EC 2.1.3.3) from Thermus thermophilus	27% id, 96% cov
OTC_THET2 / P96134: Ornithine carbamoyltransferase; OTC; OTCase; EC 2.1.3.3 from Thermus thermophilus	27% id, 96% cov
O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi	27% id, 96% cov
Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti	26% id, 98% cov
HSERO_RS07185: Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae	28% id, 86% cov
OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi	24% id, 99% cov
arcB / E3PX87: ornithine carbamoyltransferase (EC 2.1.3.3) from Acetoanaerobium sticklandii	23% id, 97% cov
OTC / O50039: ornithine carbamoyltransferase (EC 2.1.3.3) from Arabidopsis thaliana	24% id, 84% cov
OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli	27% id, 69% cov
OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli argI / GB\|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli	26% id, 69% cov
OTCC_MALP2 / Q8EVF5: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Malacoplasma penetrans	29% id, 56% cov
arcB / P75473: ornithine carbamoyltransferase, catabolic (EC 2.1.3.3) from Mycoplasma pneumoniae	31% id, 49% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory