Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Thiomicrorhabdus arctica DSM 13458 (GCF_000381085.1)

Found 36 curated entries in PaperBLAST's database that match '2.6.1.83' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Thiomicrorhabdus arctica DSM 13458, or try another query

alaC F612_RS0102765 WP_026329593.1: alanine transaminase is similar to:	PaperBLAST
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans	43% id, 98% cov
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica	41% id, 99% cov
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans	41% id, 98% cov
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus	40% id, 98% cov
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus	39% id, 99% cov
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis	39% id, 97% cov
Q2NFU1: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosphaera stadtmanae	29% id, 96% cov
DAPAT_DESHD / Q18T09: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Desulfitobacterium hafniense Q18T09: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Desulfitobacterium hafniense	28% id, 97% cov
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii	31% id, 84% cov
DAPAT_METMP / Q6LX26: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanococcus maripaludis	31% id, 85% cov
DAPAT_METTH / O26158: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanothermobacter thermautotrophicus O26158: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanothermobacter thermautotrophicus	27% id, 96% cov
Q3MAL4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis	26% id, 94% cov
DAPAT_PARUW / Q6MDE0: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Protochlamydia amoebophila Q6MDE0: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Candidatus Protochlamydia	26% id, 95% cov
A0A6P3CW87: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Verrucomicrobium spinosum	25% id, 96% cov
DAPAT_ACET2 / A3DK17: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Acetivibrio thermocellus	24% id, 97% cov
DAPAT_LEPIC / Q72NJ3: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Leptospira interrogans Q72NJ3: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Leptospira interrogans	25% id, 91% cov
DAPAT_SYNY3 / Q55828: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Synechocystis sp. Q55828: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Synechocystis sp.	25% id, 91% cov
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F612_RS0106445 WP_026329666.1: pyridoxal phosphate-dependent aminotransferase is similar to:	PaperBLAST
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus	30% id, 99% cov
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis	29% id, 98% cov
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans	29% id, 97% cov
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans	29% id, 97% cov
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica	28% id, 96% cov
DAPAT_GLOVI / Q7NDX4: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Gloeobacter violaceus Q7NDX4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Gloeobacter violaceus	27% id, 97% cov
Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana	25% id, 82% cov
DAPAT_METMP / Q6LX26: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanococcus maripaludis	25% id, 82% cov
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F612_RS0111525 WP_019557925.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme is similar to:	PaperBLAST
DAPAT_MOOTA / Q2RK33: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Moorella thermoacetica Q2RK33: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Moorella thermoacetica	26% id, 99% cov
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans	26% id, 96% cov
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans	24% id, 98% cov
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis	24% id, 98% cov
DAPAT_METMP / Q6LX26: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanococcus maripaludis	25% id, 87% cov
DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii	26% id, 80% cov
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hisC F612_RS0100590 WP_019555796.1: histidinol-phosphate transaminase is similar to:	PaperBLAST
Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans	26% id, 89% cov
DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans	25% id, 88% cov
O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus	26% id, 83% cov
Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis	24% id, 82% cov
More...

hisC F612_RS0103090 WP_019556285.1: histidinol-phosphate transaminase is similar to:	PaperBLAST
Q74GT3: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Geobacter sulfurreducens	22% id, 93% cov
DAPAT_LEPIC / Q72NJ3: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Leptospira interrogans Q72NJ3: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Leptospira interrogans	22% id, 70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory