Curated BLAST for Genomes

 

Curated BLAST

Searching in Psychromonas ossibalaenae ATCC BAA-1528 JAMM 0738 (GCF_000381745.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Psychromonas ossibalaenae ATCC BAA-1528 JAMM 0738, or try another query

tpiA G327_RS0103720 WP_019613419.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_MORMI / P50921: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
tpiA / PDB|1AW1_A: triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
P50921: triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina

54% id,
98% cov

TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli

50% id,
98% cov

TPIS_STRCO / Q9Z520: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Streptomyces coelicolor

50% id,
97% cov

More...

G327_RS0122940 WP_019617150.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

44% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory