Curated BLAST for Genomes

 

Curated BLAST

Searching in Streptococcus oralis subsp. dentisani 7747 CECT 7747 (GCF_000382825.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.55' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Streptococcus oralis subsp. dentisani 7747 CECT 7747, or try another query

HK29_RS02985 WP_001281470.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

KDGA_SULAC / Q4JC35: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.55 from Sulfolobus acidocaldarius
Q4JC35: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Sulfolobus acidocaldarius

27% id,
92% cov

KDGA_SULTO / F9VPG1: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.55 from Sulfurisphaera tokodaii
F9VPG1: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Sulfurisphaera tokodaii

25% id,
98% cov

thiE HK29_RS00190 WP_038805707.1: thiamine phosphate synthase
is similar to:
PaperBLAST

YidU / b4477: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.55; EC 4.1.2.21) from Escherichia coli
dgoA / Q6BF16: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.55) from Escherichia coli

31% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory