Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenovibrio halophilus DSM 15072 (GCF_000384235.1)

Found 51 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Hydrogenovibrio halophilus DSM 15072, or try another query

serB A377_RS0101690 WP_019894373.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_POLSJ / Q12A06: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Polaromonas sp.

52% id,
96% cov

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

51% id,
92% cov

SERB_IDILO / Q5QXU4: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Idiomarina loihiensis

48% id,
93% cov

More...

serA A377_RS0107605 WP_028485364.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

51% id,
64% cov

CA265_RS22635: phosphoserine phosphatase (EC 3.1.3.3) from Pedobacter sp.

39% id,
25% cov

A377_RS0103095 WP_019894696.1: PP2C family protein-serine/threonine phosphatase
is similar to:
PaperBLAST

RSBU_BACSU / P40399: Phosphoserine phosphatase RsbU; Sigma factor SigB regulation protein RsbU; EC 3.1.3.3 from Bacillus subtilis
P40399: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

30% id,
59% cov

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

26% id,
61% cov

A377_RS0108710 WP_019895926.1: 2-hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

31% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory