Curated BLAST for Genomes

 

Curated BLAST

Searching in Methyloferula stellata AR4 AR4T (GCF_000385335.1)

Found 5 curated entries in PaperBLAST's database that match '2.1.3.11' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methyloferula stellata AR4 AR4T, or try another query

argF A3OQ_RS0105025 WP_020174273.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

29% id,
88% cov

argF' / Q8A1E9: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides thetaiotaomicron
BT3717: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides thetaiotaomicron
Q8A1E9: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides fragilis

27% id,
92% cov

SOTC_BACF6 / E1WKT5: N-succinylornithine carbamoyltransferase; N-succinyl-L-ornithine transcarbamylase; SOTCase; EC 2.1.3.11 from Bacteroides fragilis

27% id,
92% cov

A3OQ_RS0112905 WP_026595792.1: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

26% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory