Curated BLAST for Genomes

 

Curated BLAST

Searching in Methyloferula stellata AR4 AR4T (GCF_000385335.1)

Found 85 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Methyloferula stellata AR4 AR4T, or try another query

A3OQ_RS0109070 WP_020175068.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

phaA / Q3IZW1: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Cereibacter sphaeroides

75% id,
99% cov

PGA1_c03400: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Phaeobacter inhibens

72% id,
99% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

64% id,
99% cov

More...

A3OQ_RS0104730 WP_026595499.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

40% id,
100% cov

FADA5_MYCTU / I6XHI4: Steroid 3-ketoacyl-CoA thiolase; Acetyl-CoA acetyltransferase FadA5; Beta-ketoacyl-CoA thiolase; EC 2.3.1.16 from Mycobacterium tuberculosis
fadA5 / I6XHI4: steroid 3-ketoacyl-CoA thiolase monomer (EC 2.3.1.16; EC 2.3.1.176) from Mycobacterium tuberculosis

39% id,
99% cov

P28790: acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Pseudomonas fragi

38% id,
98% cov

More...

A3OQ_RS0104720 WP_020174212.1: 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

32% id,
95% cov

A3OQ_RS0103110 WP_020173895.1: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

35% id,
37% cov

A3OQ_RS0102705 WP_020173816.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

32% id,
34% cov

A3OQ_RS0109465 WP_020175145.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

36% id,
30% cov

A3OQ_RS0118980 WP_020177023.1: crotonase/enoyl-CoA hydratase family protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

28% id,
34% cov

A3OQ_RS0116665 WP_244427327.1: chloride channel protein
is similar to:
PaperBLAST

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli
atoB / P76461: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Escherichia coli

32% id,
22% cov

A3OQ_RS0113365 WP_040581098.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

29% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

537948-539027 (frame -2) on NZ_ARWA01000001.1 Methyloferula stellata AR4 strain AR4T A3OQDRAFT_chromosome1.1_C, whole genome shotgun sequence
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

32% id,
38% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory