Curated BLAST for Genomes

 

Curated BLAST

Searching in Methyloferula stellata AR4 AR4T (GCF_000385335.1)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methyloferula stellata AR4 AR4T, or try another query

aceA A3OQ_RS0101600 WP_020173599.1: isocitrate lyase
is similar to:
PaperBLAST

Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus

62% id,
96% cov

BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis

59% id,
100% cov

ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli
Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli
aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli

58% id,
100% cov

More...

prpB A3OQ_RS0109450 WP_020175142.1: methylisocitrate lyase
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

38% id,
86% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

34% id,
89% cov

Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus

28% id,
68% cov

More...

A3OQ_RS25020 WP_020174744.1: hypothetical protein
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

41% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory