Curated BLAST for Genomes

 

Curated BLAST

Searching in Methyloferula stellata AR4 AR4T (GCF_000385335.1)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methyloferula stellata AR4 AR4T, or try another query

A3OQ_RS0117845 WP_026595984.1: acetolactate synthase 3 large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

55% id,
97% cov

poxB A3OQ_RS0101920 WP_020173663.1: ubiquinone-dependent pyruvate dehydrogenase
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

27% id,
90% cov

oxc A3OQ_RS0118060 WP_020176835.1: oxalyl-CoA decarboxylase
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

26% id,
92% cov

A3OQ_RS0110765 WP_020175398.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

24% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3611307-3613091 (frame -2) on NZ_ARWA01000001.1 Methyloferula stellata AR4 strain AR4T A3OQDRAFT_chromosome1.1_C, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

55% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory