Curated BLAST for Genomes

 

Curated BLAST

Searching in Methyloferula stellata AR4 AR4T (GCF_000385335.1)

Found 2 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthetase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methyloferula stellata AR4 AR4T, or try another query

carB A3OQ_RS0104160 WP_020174098.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

62% id,
98% cov

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

47% id,
97% cov

accC A3OQ_RS0116515 WP_020176527.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

23% id,
27% cov

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

23% id,
25% cov

pyc A3OQ_RS0102085 WP_020173695.1: pyruvate carboxylase
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

25% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory