Curated BLAST for Genomes

 

Curated BLAST

Searching in Methyloferula stellata AR4 AR4T (GCF_000385335.1)

Found 6 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methyloferula stellata AR4 AR4T, or try another query

hisF A3OQ_RS0105060 WP_026595512.1: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

60% id,
99% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

54% id,
98% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

53% id,
99% cov

More...

hisA A3OQ_RS0105065 WP_026595513.1: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

30% id,
90% cov

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

28% id,
90% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

25% id,
94% cov

More...

guaB A3OQ_RS0112625 WP_020175758.1: IMP dehydrogenase
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

30% id,
68% cov

dusB A3OQ_RS0114325 WP_051116115.1: tRNA dihydrouridine synthase DusB
is similar to:
PaperBLAST

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

40% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory