Curated BLAST for Genomes

 

Curated BLAST

Searching in Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 ZN7a-9 (GCF_000387565.1)

Found 105 curated entries in PaperBLAST's database that match '1.2.1.3' as complete word(s).

These curated entries have 88 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 ZN7a-9, or try another query

B506_RS08415 B506_08880 WP_002880378.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

geoB / H1ZV37: geranial dehydrogenase (EC 1.2.1.3; EC 1.2.1.86) from Castellaniella defragrans

37% id,
99% cov

ALDY_BACSU / P94358: Putative aldehyde dehydrogenase AldY; EC 1.2.1.3 from Bacillus subtilis

34% id,
96% cov

Q92UV7: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Sinorhizobium meliloti

34% id,
95% cov

More...

B506_RS05540 B506_05824 WP_002879330.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

A6T8Z5: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Klebsiella pneumoniae

38% id,
97% cov

ALDH_PAENI / Q8GAK7: Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 from Paenarthrobacter nicotinovorans

36% id,
98% cov

geoB / H1ZV37: geranial dehydrogenase (EC 1.2.1.3; EC 1.2.1.86) from Castellaniella defragrans

31% id,
93% cov

More...

B506_RS00085 B506_00100 WP_002876377.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

A9KN57: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Lachnoclostridium phytofermentans

30% id,
89% cov

ADHE_STRPN / A0A0H2URT2: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae

47% id,
52% cov

ADHE_STRP2 / A0A0H2ZM56: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae

47% id,
52% cov

More...

B506_RS03505 B506_03758 WP_002878436.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

29% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

9385-11007 (frame -3) on NZ_ALPY01000003.1 Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 strain ZN7a-9 contig3, whole genome shotgun sequence
is similar to:
PaperBLAST

A9KN57: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Lachnoclostridium phytofermentans
Also see hits to annotated proteins above

30% id,
92% cov

2367-3371 (frame -3) on NZ_ALPY01000034.1 Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 strain ZN7a-9 contig34, whole genome shotgun sequence
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum
Also see hits to annotated proteins above

42% id,
31% cov

ADHE_STRPN / A0A0H2URT2: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae
Also see hits to annotated proteins above

44% id,
30% cov

ADHE_STRP2 / A0A0H2ZM56: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae
Also see hits to annotated proteins above

44% id,
30% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory