Curated BLAST for Genomes

 

Curated BLAST

Searching in Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 ZN7a-9 (GCF_000387565.1)

Found 15 curated entries in PaperBLAST's database that match '2.7.2.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 ZN7a-9, or try another query

B506_RS07515 B506_07913 WP_002880041.1: acetate kinase
is similar to:
PaperBLAST

ackA / P71104: acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum

49% id,
100% cov

ackA / E3PRH0: acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii

47% id,
99% cov

PDUW_SALTY / P74879: Propionate kinase PduW; EC 2.7.2.15 from Salmonella typhimurium

45% id,
97% cov

More...

purK B506_RS05390 B506_05667 WP_002879288.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

25% id,
99% cov

accC B506_RS01455 B506_01575 WP_002877457.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

21% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory