Curated BLAST for Genomes

 

Curated BLAST

Searching in Hippea alviniae EP5-r (GCF_000420385.1)

Found 20 curated entries in PaperBLAST's database that match '1.2.1.16' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Hippea alviniae EP5-r, or try another query

G415_RS0101870 WP_022669887.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

38% id,
99% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

38% id,
98% cov

Q976X5: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5) from Sulfurisphaera tokodaii

37% id,
100% cov

More...

pruA G415_RS0108295 WP_022671215.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Q976X5: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5) from Sulfurisphaera tokodaii

26% id,
95% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

27% id,
91% cov

Q82TA7: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (EC 1.2.1.90) from Nitrosomonas europaea

26% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory