Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylohalobius crimeensis 10Ki (GCF_000421465.1)

Found 11 curated entries in PaperBLAST's database that match '2.3.3.21' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylohalobius crimeensis 10Ki, or try another query

H035_RS0104410 WP_321162844.1: alpha-isopropylmalate synthase regulatory domain-containing protein
is similar to:
PaperBLAST

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans
cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans

48% id,
100% cov

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

33% id,
100% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

27% id,
100% cov

More...

H035_RS0101200 WP_022947189.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

42% id,
99% cov

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.3.21 from Leptospira interrogans
cimA / Q8F3Q1: (R)-citramalate synthase subunit (EC 2.3.3.21) from Leptospira interrogans

28% id,
98% cov

CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens
cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens
Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens

27% id,
98% cov

More...

oadA H035_RS0103070 WP_022947537.1: sodium-extruding oxaloacetate decarboxylase subunit alpha
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

28% id,
30% cov

oadA H035_RS0109910 WP_022948822.1: sodium-extruding oxaloacetate decarboxylase subunit alpha
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

26% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory