Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylohalobius crimeensis 10Ki (GCF_000421465.1)

Found 22 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylohalobius crimeensis 10Ki, or try another query

H035_RS19450 WP_235044573.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

56% id,
98% cov

bibA / B6EP92: L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida

51% id,
94% cov

lysA H035_RS0111945 WP_022949210.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

32% id,
99% cov

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium

27% id,
95% cov

H035_RS0111235 WP_022949073.1: TIGR00730 family Rossman fold protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

31% id,
81% cov

bioF H035_RS0105815 WP_022948059.1: 8-amino-7-oxononanoate synthase
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

28% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory