Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Methylohalobius crimeensis 10Ki (GCF_000421465.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylohalobius crimeensis 10Ki, or try another query

lysA H035_RS0111945 WP_022949210.1: diaminopimelate decarboxylase is similar to:	PaperBLAST
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae	65% id, 100% cov
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	48% id, 97% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	44% id, 97% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	44% id, 97% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	42% id, 94% cov
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima	39% id, 97% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	38% id, 96% cov
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis	36% id, 95% cov
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis	34% id, 98% cov
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus	33% id, 99% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	37% id, 86% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	37% id, 85% cov
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli	32% id, 99% cov
DCDA_MYCTU / P9WIU7: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis P9WIU7: diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis	33% id, 94% cov
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum	32% id, 94% cov
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	35% id, 42% cov
More...

speA H035_RS0104580 WP_022947821.1: biosynthetic arginine decarboxylase is similar to:	PaperBLAST
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis	28% id, 74% cov
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron	24% id, 73% cov
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori	26% id, 63% cov
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori	26% id, 63% cov
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii	24% id, 66% cov
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	24% id, 49% cov
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana	23% id, 49% cov
More...

H035_RS0106110 WP_200861531.1: aspartate kinase is similar to:	PaperBLAST
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	25% id, 53% cov

H035_RS0101685 WP_022947281.1: aspartate kinase is similar to:	PaperBLAST
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	30% id, 44% cov
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica	42% id, 6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory