Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylohalobius crimeensis 10Ki (GCF_000421465.1)

Found 34 curated entries in PaperBLAST's database that match '5.3.1.8' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylohalobius crimeensis 10Ki, or try another query

H035_RS0108820 WP_022948623.1: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
is similar to:
PaperBLAST

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa

49% id,
96% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens

48% id,
96% cov

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii

42% id,
99% cov

manA H035_RS18120 WP_022947775.1: mannose-6-phosphate isomerase, class I
is similar to:
PaperBLAST

Pmi / b1613: mannose-6-phosphate isomerase (EC 5.3.1.8) from Escherichia coli
manA / P00946: mannose-6-phosphate isomerase (EC 5.3.1.8) from Escherichia coli

41% id,
94% cov

P25081: mannose-6-phosphate isomerase (EC 5.3.1.8) from Salmonella enterica

39% id,
94% cov

MPI_HUMAN / P34949: Mannose-6-phosphate isomerase; Phosphohexomutase; Phosphomannose isomerase; PMI; EC 5.3.1.8 from Homo sapiens

34% id,
99% cov

More...

glmM H035_RS0115785 WP_022949929.1: phosphoglucosamine mutase
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

29% id,
99% cov

H035_RS0103970 WP_022947704.1: cupin domain-containing protein
is similar to:
PaperBLAST

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii

40% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory