Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylohalobius crimeensis 10Ki (GCF_000421465.1)

Found 2 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthetase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylohalobius crimeensis 10Ki, or try another query

carB H035_RS0115810 WP_022949934.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

69% id,
100% cov

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

51% id,
98% cov

purT H035_RS0107785 WP_022948428.1: formate-dependent phosphoribosylglycinamide formyltransferase
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

22% id,
30% cov

H035_RS0103075 WP_022947538.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

24% id,
21% cov

accC H035_RS0104445 WP_022947794.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

23% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory