Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfatiglans anilini DSM 4660 (GCF_000422285.1)

Found 26 curated entries in PaperBLAST's database that match '5.3.1.16' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfatiglans anilini DSM 4660, or try another query

hisA H567_RS0105470 WP_028320632.1: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

52% id,
97% cov

PP_0292: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas putida

51% id,
96% cov

PS417_01575: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas simiae

51% id,
96% cov

More...

H567_RS0111765 WP_028321552.1: HisA/HisF-related TIM barrel protein
is similar to:
PaperBLAST

BPHYT_RS17685: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Burkholderia phytofirmans

26% id,
96% cov

HSERO_RS20320: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Herbaspirillum seropedicae

26% id,
93% cov

HIS4_THEMA / Q9X0C7: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16 from Thermotoga maritima

23% id,
99% cov

More...

H567_RS0113485 WP_028321803.1: imidazole glycerol phosphate synthase HisHF
is similar to:
PaperBLAST

BPHYT_RS17685: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Burkholderia phytofirmans

24% id,
83% cov

SMc02570: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sinorhizobium meliloti

32% id,
48% cov

CCNA_03852: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus

31% id,
39% cov

More...

H567_RS0116845 WP_028322288.1: nitronate monooxygenase
is similar to:
PaperBLAST

HIS4_STRCO / P16250: Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor

35% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory