Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermithiobacillus tepidarius DSM 3134 (GCF_000423825.1)

Found 17 curated entries in PaperBLAST's database that match '1.13.11.2' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thermithiobacillus tepidarius DSM 3134, or try another query

G579_RS0110830 WP_028990208.1: CDP-6-deoxy-delta-3,4-glucoseen reductase
is similar to:
PaperBLAST

P23103: catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida

32% id,
86% cov

G579_RS0107580 WP_028989705.1: VOC family protein
is similar to:
PaperBLAST

Q52264: catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida

29% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory