Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermithiobacillus tepidarius DSM 3134 (GCF_000423825.1)

Found 28 curated entries in PaperBLAST's database that match '2.5.1.54' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thermithiobacillus tepidarius DSM 3134, or try another query

aroF G579_RS0110100 WP_028990085.1: 3-deoxy-7-phosphoheptulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

52% id,
97% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

49% id,
99% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

49% id,
94% cov

More...

G579_RS0113295 WP_028990559.1: 3-deoxy-7-phosphoheptulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

40% id,
95% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

36% id,
98% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

36% id,
93% cov

More...

kdsA G579_RS0114300 WP_028990713.1: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

31% id,
92% cov

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

32% id,
86% cov

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

30% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory