Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermithiobacillus tepidarius DSM 3134 (GCF_000423825.1)

Found 19 curated entries in PaperBLAST's database that match '4.3.2.1' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thermithiobacillus tepidarius DSM 3134, or try another query

argH G579_RS0110780 WP_028990200.1: argininosuccinate lyase
is similar to:
PaperBLAST

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

52% id,
100% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

52% id,
99% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

50% id,
99% cov

More...

purB G579_RS0105140 WP_028989317.1: adenylosuccinate lyase
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

24% id,
89% cov

G579_RS0107085 WP_028989624.1: aspartate ammonia-lyase
is similar to:
PaperBLAST

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

24% id,
67% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

24% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory