Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermithiobacillus tepidarius DSM 3134 (GCF_000423825.1)

Found 22 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Thermithiobacillus tepidarius DSM 3134, or try another query

gcvH G579_RS0109685 WP_028990023.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

56% id,
100% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

55% id,
99% cov

PfGW456L13_1869: glycine cleavage system H protein (EC 1.4.1.27) from Pseudomonas fluorescens

42% id,
98% cov

More...

gcvH G579_RS0105270 WP_038018313.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

40% id,
96% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

41% id,
88% cov

PfGW456L13_1869: glycine cleavage system H protein (EC 1.4.1.27) from Pseudomonas fluorescens

38% id,
83% cov

More...

G579_RS0105770 WP_028989426.1: glycine cleavage system protein H
is similar to:
PaperBLAST

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

38% id,
95% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

40% id,
92% cov

PfGW456L13_1869: glycine cleavage system H protein (EC 1.4.1.27) from Pseudomonas fluorescens

36% id,
98% cov

More...

G579_RS0105280 WP_028989345.1: glycine cleavage system protein H
is similar to:
PaperBLAST

PfGW456L13_1869: glycine cleavage system H protein (EC 1.4.1.27) from Pseudomonas fluorescens

32% id,
98% cov

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

33% id,
86% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

26% id,
95% cov

More...

oadA G579_RS0106620 WP_028989552.1: sodium-extruding oxaloacetate decarboxylase subunit alpha
is similar to:
PaperBLAST

GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus

43% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory