Curated BLAST for Genomes

 

Curated BLAST

Searching in Maridesulfovibrio zosterae DSM 11974 (GCF_000425265.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Maridesulfovibrio zosterae DSM 11974, or try another query

H589_RS0111930 WP_027722227.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

46% id,
95% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

44% id,
91% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

39% id,
97% cov

More...

H589_RS0116575 WP_027723059.1: pyruvate carboxyltransferase
is similar to:
PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

36% id,
96% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

36% id,
86% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

34% id,
91% cov

More...

cimA H589_RS0114240 WP_027722653.1: citramalate synthase
is similar to:
PaperBLAST

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

30% id,
100% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

34% id,
87% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

29% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory