Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocapsa acidiphila B2 (GCF_000427445.1)

Found 15 curated entries in PaperBLAST's database that match '1.2.1.38' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methylocapsa acidiphila B2, or try another query

argC METAC_RS0110060 WP_026606927.1: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

Ga0059261_0351: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Sphingomonas koreensis

51% id,
96% cov

SMc01801: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Sinorhizobium meliloti

49% id,
100% cov

N515DRAFT_3769: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Dyella japonica

34% id,
93% cov

More...

argB METAC_RS0102300 WP_026605792.1: acetylglutamate kinase
is similar to:
PaperBLAST

ARG56_SCHPO / P31318: Protein arg11, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe
arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe

27% id,
30% cov

ARG56_YEAST / Q01217: Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae

25% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory