Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocapsa acidiphila B2 (GCF_000427445.1)

Found 39 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylocapsa acidiphila B2, or try another query

asnB METAC_RS0108720 WP_026606729.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

35% id,
97% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

32% id,
96% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

34% id,
87% cov

More...

asnB METAC_RS0108870 WP_026606747.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

34% id,
97% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

31% id,
96% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

32% id,
63% cov

More...

purF METAC_RS0106555 WP_245257430.1: amidophosphoribosyltransferase
is similar to:
PaperBLAST

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

25% id,
27% cov

glmS METAC_RS0104655 WP_026606116.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

31% id,
21% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

29% id,
20% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

41% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory