Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocapsa acidiphila B2 (GCF_000427445.1)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylocapsa acidiphila B2, or try another query

carB METAC_RS0109340 WP_026606814.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

45% id,
90% cov

METAC_RS0107890 WP_026606601.1: acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

23% id,
39% cov

pyc METAC_RS0121420 WP_026608590.1: pyruvate carboxylase
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

24% id,
29% cov

METAC_RS0105105 WP_036256001.1: biotin carboxylase N-terminal domain-containing protein
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

26% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory