Curated BLAST for Genomes

 

Curated BLAST

Searching in Sedimenticola selenatireducens DSM 17993 (GCF_000428045.1)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.343' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sedimenticola selenatireducens DSM 17993, or try another query

A3GO_RS0115125 WP_051302414.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

6PGDH_GLUOX / G5EBD7: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Gluconobacter oxydans
G5EBD7: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Gluconobacter oxydans

24% id,
95% cov

6PGD_HALVD / D4GST8: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Haloferax volcanii
D4GST8: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Haloferax volcanii

24% id,
88% cov

6PGDH_BACSU / P12013: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; EC 1.1.1.343 from Bacillus subtilis
P12013: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Bacillus subtilis

24% id,
65% cov

More...

A3GO_RS0112630 WP_029133701.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

Q9WYR9: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Thermotoga maritima

23% id,
62% cov

A3GO_RS22465 WP_051301816.1: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

6PGD_HALVD / D4GST8: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Haloferax volcanii
D4GST8: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Haloferax volcanii

38% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory