Curated BLAST for Genomes

 

Curated BLAST

Searching in Sedimenticola selenatireducens DSM 17993 (GCF_000428045.1)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sedimenticola selenatireducens DSM 17993, or try another query

A3GO_RS0114065 WP_029133935.1: ROK family protein
is similar to:
PaperBLAST

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

52% id,
99% cov

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

51% id,
96% cov

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

32% id,
96% cov

More...

glk A3GO_RS0106965 WP_029132791.1: glucokinase
is similar to:
PaperBLAST

A0A3G4RI75: glucokinase (EC 2.7.1.2) from Methylomonas methanica

35% id,
98% cov

GLK_ECOLI / P0A6V8: Glucokinase; Glucose kinase; EC 2.7.1.2 from Escherichia coli
Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli

32% id,
97% cov

Dshi_1655: glucokinase (EC 2.7.1.2) from Dinoroseobacter shibae

32% id,
97% cov

More...

bcrA A3GO_RS0115785 WP_029134228.1: benzoyl-CoA reductase subunit A
is similar to:
PaperBLAST

GLK_PYRCJ / A3MUZ0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC 2.7.1.2 from Pyrobaculum calidifontis
A3MUZ0: glucokinase (EC 2.7.1.2) from Pyrobaculum calidifontis

38% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory