Curated BLAST for Genomes

 

Curated BLAST

Searching in Sedimenticola selenatireducens DSM 17993 (GCF_000428045.1)

Found 6 curated entries in PaperBLAST's database that match '2.8.3.13' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sedimenticola selenatireducens DSM 17993, or try another query

A3GO_RS0109000 WP_029133118.1: CoA transferase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

61% id,
96% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

61% id,
96% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

54% id,
95% cov

More...

A3GO_RS0114455 WP_029134000.1: CoA transferase
is similar to:
PaperBLAST

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

36% id,
84% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

33% id,
84% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

31% id,
84% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory