Curated BLAST for Genomes

 

Curated BLAST

Searching in Sedimenticola selenatireducens DSM 17993 (GCF_000428045.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sedimenticola selenatireducens DSM 17993, or try another query

lysA A3GO_RS0106465 WP_084609847.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

 43% id,
97% cov

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

 42% id,
99% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

 42% id,
96% cov

More...

lysA A3GO_RS0108440 WP_029133027.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii

 32% id,
92% cov

DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus

 31% id,
95% cov

DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli

 30% id,
95% cov

More...

A3GO_RS0105035 WP_084609792.1: pyridoxal-dependent decarboxylase, exosortase A system-associated
is similar to:		 PaperBLAST

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

 31% id,
93% cov

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

 30% id,
92% cov

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

 30% id,
92% cov

More...

speA A3GO_RS0112475 WP_029133677.1: biosynthetic arginine decarboxylase
is similar to:		 PaperBLAST

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

 26% id,
74% cov

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

 26% id,
70% cov

DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii

 25% id,
70% cov

More...

A3GO_RS0110840 WP_029133415.1: aspartate kinase
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 29% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1060-2358 (frame -3) on NZ_ATZE01000012.1 Sedimenticola selenatireducens DSM 17993 A3GODRAFT_scaffold_10.11_C, whole genome shotgun sequence
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica
Also see hits to annotated proteins above

 28% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory