Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfatibacillum aliphaticivorans DSM 15576 (GCF_000429905.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfatibacillum aliphaticivorans DSM 15576, or try another query

G491_RS0101035 WP_028313261.1: hypothetical protein
is similar to:		 PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 45% id,
97% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

 41% id,
96% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 42% id,
92% cov

More...

G491_RS0107090 WP_028314083.1: 2-isopropylmalate synthase
is similar to:		 PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

 46% id,
95% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 40% id,
92% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 37% id,
98% cov

More...

cimA G491_RS0107085 WP_028314082.1: citramalate synthase
is similar to:		 PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 33% id,
88% cov

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

 28% id,
95% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 31% id,
85% cov

More...

G491_RS0117890 WP_015948529.1: pyruvate carboxyltransferase
is similar to:		 PaperBLAST

HOSM_SCHPO / Q9Y823: Homocitrate synthase, mitochondrial; HCS; EC 2.3.3.14 from Schizosaccharomyces pombe
lys4 / RF|NP_596458.1: homocitrate synthase (predicted); EC 2.3.3.14 from Schizosaccharomyces pombe

 27% id,
53% cov

C7C437: homocitrate synthase (EC 2.3.3.14) from Aspergillus fumigatus

 22% id,
57% cov

G491_RS0117940 WP_028315568.1: pyruvate carboxylase subunit B
is similar to:		 PaperBLAST

C7C437: homocitrate synthase (EC 2.3.3.14) from Aspergillus fumigatus

 21% id,
54% cov

HOSM_SCHPO / Q9Y823: Homocitrate synthase, mitochondrial; HCS; EC 2.3.3.14 from Schizosaccharomyces pombe
lys4 / RF|NP_596458.1: homocitrate synthase (predicted); EC 2.3.3.14 from Schizosaccharomyces pombe

 23% id,
43% cov

HOSC_YEAST / P48570: Homocitrate synthase, cytosolic isozyme; HCS; EC 2.3.3.14 from Saccharomyces cerevisiae
LYS20 / P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae
P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae

 24% id,
36% cov

More...

G491_RS0108800 WP_028314336.1: biotin/lipoyl-containing protein
is similar to:		 PaperBLAST

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

 25% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

208290-209924 (frame +3) on NZ_AUCT01000006.1 Desulfatibacillum aliphaticivorans DSM 15576 G491DRAFT_scaffold00005.5_C, whole genome shotgun sequence
is similar to:		 PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii
Also see hits to annotated proteins above

 33% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory