Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfatibacillum aliphaticivorans DSM 15576 (GCF_000429905.1)

Found 16 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfatibacillum aliphaticivorans DSM 15576, or try another query

ilvD G491_RS0107060 WP_028314077.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

56% id,
100% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

45% id,
96% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

43% id,
97% cov

More...

ilvD G491_RS0117060 WP_051327337.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

49% id,
95% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

43% id,
97% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

41% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory