Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfatibacillum aliphaticivorans DSM 15576 (GCF_000429905.1)

Found 23 curated entries in PaperBLAST's database that match '6.1.1.23' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfatibacillum aliphaticivorans DSM 15576, or try another query

aspS G491_RS0115860 WP_028315299.1: aspartate--tRNA ligase
is similar to:		 PaperBLAST

DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris

 61% id,
96% cov

Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans

 59% id,
98% cov

O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis

 58% id,
99% cov

More...

asnS G491_RS0122995 WP_051327472.1: asparagine--tRNA ligase
is similar to:		 PaperBLAST

SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum
O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum

 31% id,
96% cov

SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus
O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus

 30% id,
94% cov

SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei

 28% id,
93% cov

More...

lysS G491_RS0117295 WP_028315484.1: lysine--tRNA ligase
is similar to:		 PaperBLAST

SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum
O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum

 28% id,
97% cov

SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei

 25% id,
96% cov

SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus
O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus

 26% id,
95% cov

More...

epmA G491_RS0118000 WP_028315575.1: EF-P lysine aminoacylase EpmA
is similar to:		 PaperBLAST

SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis

 23% id,
27% cov

Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans

 30% id,
21% cov

DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris

 28% id,
20% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

62307-64121 (frame -1) on NZ_AUCT01000018.1 Desulfatibacillum aliphaticivorans DSM 15576 G491DRAFT_scaffold00015.15_C, whole genome shotgun sequence
is similar to:		 PaperBLAST

DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris
Also see hits to annotated proteins above

 60% id,
98% cov

Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus
Also see hits to annotated proteins above

 51% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory