Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfatibacillum aliphaticivorans DSM 15576 (GCF_000429905.1)

Found 6 curated entries in PaperBLAST's database that match '2-oxoacid:ferredoxin oxidoreductase%subunit alpha' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfatibacillum aliphaticivorans DSM 15576, or try another query

G491_RS0115625 WP_015947475.1: 2-oxoacid:acceptor oxidoreductase subunit alpha
is similar to:
PaperBLAST

OFOA_SACSO / A0A0E3JT70: 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 from Saccharolobus solfataricus

34% id,
56% cov

OFOA2_AERPE / Q9YBX7: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Aeropyrum pernix

31% id,
61% cov

OFOA1_AERPE / Q9YA13: 2-oxoacid:ferredoxin oxidoreductase 1, subunit alpha; OFOR1; EC 1.2.7.11 from Aeropyrum pernix

32% id,
60% cov

More...

G491_RS0101620 WP_028313342.1: 2-oxoacid:acceptor oxidoreductase subunit alpha
is similar to:
PaperBLAST

OFOA_SACSO / A0A0E3JT70: 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 from Saccharolobus solfataricus

31% id,
61% cov

OFOA2_SULTO / Q96XT2: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Sulfurisphaera tokodaii

30% id,
61% cov

OFOA2_AERPE / Q9YBX7: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Aeropyrum pernix

30% id,
60% cov

More...

G491_RS0118515 WP_028315641.1: 3-methyl-2-oxobutanoate dehydrogenase subunit VorB
is similar to:
PaperBLAST

OFOA2_AERPE / Q9YBX7: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Aeropyrum pernix

31% id,
55% cov

OFOA1_SULTO / Q96Y66: 2-oxoacid:ferredoxin oxidoreductase 1, subunit alpha; OFOR1; EC 1.2.7.11 from Sulfurisphaera tokodaii

34% id,
31% cov

OFOA2_SULTO / Q96XT2: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Sulfurisphaera tokodaii

38% id,
28% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory